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biowebdb consortium comparative genomics approaches skip to content home cig iaea-agb levantamento metagenômica pbcs platform publications contact about posted on february 7, 2017 | leave a comment the biowebdb consortium was created in 2003 and initially funded by cnpq in 2004. while it involves several brazilian universities and research institutes, its multi-user “comparative genomics” platform is physically hosted at the oswaldo cruz institute, fiocruz. its portal and tools receive many visits a month, mostly from brazil, usa and some parts of europe. biowebdb at fiocruz at fiocruz, biowebdb is the official “comparative genomics” multi-user platform of the oswaldo cruz institute and coordinated by dr. alberto dávila. aims comparative approaches involving the integrative use of heterogeneous databases, analyses tools, distributed computing and (re)annotation system as well as sensitive similarity detection algorithms have been catalyzed by a variety of sequenced genomes. the biowebdb consortium has initially established collaborations with genedb and tcruzidb. aiming to build an integrated, user-friendly and flexible multi-user platform, capable to deal with different datasets and genome projects, biowebdb’s platform is being designed to provide interoperability among different analyses tools and more sensitive algorithms for distant homology detection. it centers on the use of ontology based metadata, xml, web services, as well as a combination of hidden markov models with ai technologies for algorithm improvement. the biowebdb multi-user platform is being progressively implemented and is publicly available at http://www.biowebdb.org . developments since its creation the biowebdb consortium aimed to establish collaborations with several groups to complement and spread its researches and activities. some international events as the international workshops on genomics databases ( 2005 , 2007 and 2010 ) and embo courses ( 2007 and 2008 ) have been organized during the last years. also, the consortium has been instrumental in the creation of (a) the graduate program on computational and systems biology at fiocruz and (b) the rio de janeiro network for computational and systems biology : http://www.biowebdb.org/rbcs/ as well as supporting the comparative genomics and proteomics of pathogenic trypanosomatids project funded by finep . more recently, several member institutes of biowebdb joined a european-funded project for grid development [ eela-2 ] in several areas, including bioinformatics. finally, we recently organized an international systems biology course and created a systems biology blog for that. also, we assisted in the proposal to create the computational and systems biology pole at fiocruz. leave a comment posted in uncategorized platform arpa cdd mirror genbank mirror genotype go-lite mirror grid kegg mirror pdb mirror pedro primer designer primer3plus protogim protozoadb readseq stingray uniprot mirror weblogo wemboss cloud computing cloudbrush clousblast contrail crossbow ddbj read annotation pipeline eoulsan proteocloud related cg-pipeline codon usage database coma comparative genomics – nih compass computational and systems biology pole egene elph evola fred genewaltz glimmer hhsearch insignia integrated microbial genomes linked open drug data metagenomethreader mgip mips services misa mothur orthodisease prc pubmed rbcs svm hustle systems biology blog variscan webprc twitter last day to stop by booth 1200 in the @aspb #plantbio18 exhibit hall and chat with jgi and @doekbase to chat, watch… https://t.co/peuyost9o0 jgi meet metabolomics experts at https://t.co/c6plqjbeb1 . circulating metabolites and survival among patients with panc… https://t.co/9y3d0q9k6i emetabolomics visit @ https://t.co/ttpj9jrpz7 and book your speaker slot for 7th internatioanl #conference on… https://t.co/ysez6wsgnv intebiologyconf join https://t.co/rcrehhyqcq and know recent innovations on metabolomics and systems biology. metabolomics for func… https://t.co/guv1pq6nep emetabolomics meet experts and inspirational speakers of metabolomics at https://t.co/rcrehhyqcq . metabolite quantitation: organi… https://t.co/en9lbe9dyb emetabolomics databases 1000genomes anenpi camera clinmaldb cog/kog database of orthologous promoters drugbank ensembl ensembl genomes eupathdomains funcatdb gene3d gold grs utrdb inparanoid integr8 kegg orthology leishbase leyshcyc mbgd nbase oma orthodb orthologid p-pod p. falciparum database pacdb phog phylomedb plasmodraft rdp reactome roundup superfamily the gene ontology treefam trypsproteome uniprot utrdb world protein database journals bioinformatics bmc bioinformatics briefings in functional genomics comparative and functional genomics database evolutionary bioinformatics genome biology in silico biology international journal of data mining and bioinformatics journal of bioinformatics and computational biology journal of computational biology journal of structural and functional genomics omics: a journal of integrative biology plos computational biology proteins: structure, function, and bioinformatics proudly powered by wordpress. theme: coraline by wordpress.com .

URL analysis for biowebdb.org

http://www.biowebdb.org/pub/uniprot/
http://biowebdb.org/?page_id=274
http://biowebdb.org/?page_id=237
http://www.biowebdb.org/pub/pdb/
http://www.biowebdb.org/pub/genbank/
http://www.biowebdb.org/pub/kegg/
http://grid.biowebdb.org
http://www.biowebdb.org/awstats/awstats.pl
http://www.biowebdb.org/iwgd/2010/
http://www.biowebdb.org/wemboss
http://kineto2.biowebdb.org/genotype/
http://wiki.biowebdb.org/index.php/international_systems_biology_course
http://www.biowebdb.org/readseq/
http://biowebdb.org/#content
http://www.biowebdb.org/embo/2007/
ebi.ac.uk
gene3d.biochem.ucl.ac.uk
supfam.cs.bris.ac.uk
supfam.mrc-lmb.cam.ac.uk

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Domain Name: BIOWEBDB.ORG
Registry Domain ID: D103962582-LROR
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Registry Registrant ID: C86235186-LROR
Registrant Name: Alberto Davila
Registrant Organization: Fiocruz
Registrant Street: DBBM-Fiocruz, Av. Brasil 4365
Registrant City: Rio de Janeiro
Registrant State/Province: Rio de Janeiro
Registrant Postal Code: 21045-900
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Admin Name: Alberto Davila
Admin Organization: Fiocruz
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  NAME biowebdb.org

  HANDLE D103962582-LROR

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OWNER

  HANDLE C86235186-LROR

  NAME Alberto Davila

  ORGANIZATION Fiocruz

ADDRESS

STREET
DBBM-Fiocruz, Av. Brasil 4365

  CITY Rio de Janeiro

  STATE Rio de Janeiro

  PCODE 21045-900

  COUNTRY BR

  PHONE +55.21386582

  EMAIL [email protected]

ADMIN

  HANDLE C86235188-LROR

  NAME Alberto Davila

  ORGANIZATION Fiocruz

ADDRESS

STREET
DBBM-Fiocruz, Av. Brasil 4365

  CITY Rio de Janeiro

  STATE Rio de Janeiro

  PCODE 21045-900

  COUNTRY BR

  PHONE +55.21386582

  EMAIL [email protected]

TECH

  HANDLE C86235187-LROR

  NAME LLC. Network Solutions

  ORGANIZATION Network Solutions, LLC.

ADDRESS

STREET
13200 Woodland Park Drive

  CITY Herndon

  STATE Virginia

  PCODE 20171-3025

  COUNTRY US

  PHONE +1.188864296

  EMAIL [email protected]

  REGISTERED yes

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